PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010985P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 306aa    MW: 32742.1 Da    PI: 6.6038
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010985P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.6e-06443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ +e+  +  fC+ ++  lC+ C    H+       H+
  MELO3C010985P1  4 QCDVCEKGDAAVFCTADEAALCDLCDHRVHHAnklaskHR 43
                    7******88*******************964446777776 PP

2zf-B_box25.13.7e-085495237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    e+++C+ ++e +  lfC++++  lC++C + +H+       H
  MELO3C010985P1 54 EAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSAneltkkH 95
                    5789*******9*********************655555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.352147IPR000315B-box-type zinc finger
CDDcd000218.80E-6347No hitNo description
SMARTSM003361.6E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.76953100IPR000315B-box-type zinc finger
SMARTSM003367.7E-1553100IPR000315B-box-type zinc finger
PfamPF006433.8E-65496IPR000315B-box-type zinc finger
CDDcd000215.77E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKIQCDVCEK GDAAVFCTAD EAALCDLCDH RVHHANKLAS KHRRFSLLRP DAGEAPVCDV  60
CKERRGFLFC QQDRAILCRE CDDPIHSANE LTKKHDRFLL TGIKLSASAA LYAPPPSGEK  120
QIESGGRVVS ASKSKGSVKK VAAVSKVPTI CTPNVCVNAP TNITPAAVVN KGGGGQIATG  180
GGGSASSISE YLMETLPGWH FEDFLDSSVS PPFVEFDDGI GFPFVEGDLN GCFSSSERLE  240
LWVPQGPPAA LYNSGLMMNN GLKDTKELGV NSSKVNREWT DDGFTVPQIT STAPSSGFKR  300
SRPFW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444771.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLA0A0A0LL530.0A0A0A0LL53_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s02970.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-64salt tolerance homolog2